COVID-19 Cell Atlas
Patient donors
COVID-19 airway and matched PBMCs

Meyer group & Nikolić group — Institute: UCL-SANGER — Release: 2

AirwayWash and PBMC

Sims group & Farber group — Institute: CUIMC — Release: 1

Download all: .tar.gz md5 

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/8 — Sex: 1 — Race: 0 — Ethnicity: 1

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

Sims Farber — Release: 1

Download: .h5ad md5 

Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

COVID-19 Autoimmunity PBMCs
Interactive view

Vento-Tormo group — Institute: SANGER — Release: 2

Download: .h5ad md5 .csv

Nasal Epithelia
Interactive view

Shalek group & Ordovas-Montanes Lab Preprint — Institute: Broad BCH UMMC — Release: 2

Download: .h5ad md5 

Age: 0/1/1.8/3.0/4.0/5.0/6.0/8.0 — Sex: 0/1 — Race: 0/1 — Ethnicity: 1

00803_MGH_Broad00803_MGH_Broad
Interactive view

Villani group — Institute: MGH and Broad — Release: 1

Download: .h5ad md5 

Age: 4/5/6/7/8 — Sex: 0/1 — Race: 0/1/3 — Ethnicity: 1/2

Bronchoalveolar lavage fluid
Interactive view

Vandamme — Institute: VIB-UGent — Release: 1

Download: .h5ad md5 

Age: 1.8/3/4/5/6/7 — Sex: 0/1

Peripheral Blood Mononuclear Cells (PBMCs)
Interactive view

Blish Lab — Release: 1

Download: .h5ad md5 .rds md5 

Sex: 0/1 — Source: Nature

Blood PBMCs from COVID-19 patients over time

Tsang Lab — Institute: NIH NIAID — Release: 1

Sex: 0/1 — Source: DOI

Adaptive Cells
Interactive view

Download h5ad/loom/rds raw

Innate Cells
Interactive view

Download h5ad/loom/rds raw

PBMCs and granulocytes

Blish Lab — Release: 1

Download: .rds md5 

Sex: 0/1 — Source: DOI