COVID-19 Cell Atlas
Patient donors
Wellcome Trust Human Cell Atlas Human Cell Atlas
COVID-19 airway and matched PBMCs

Meyer group & Nikolić group — Institute: UCL-SANGER — Release: 2

Airway
Interactive view

Download: .h5ad .h5ad (raw) md5 

PBMC
Interactive view

Download: .h5ad .h5ad (raw) md5 

AirwayWash and PBMC

Sims group & Farber group — Institute: CUIMC — Release: 1

Download all: .tar.gz md5 

COV028A6
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

COV022A3
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

COV028B3
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

COV022A2
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

COV026A3
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

COV026A6
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

COV022B2
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

COV026A2
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

COV026A1
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

COV022B3
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

COV028B4
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

COV028A3
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

COV022A1
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

COV028B6
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

COV028A4
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

COV027A1
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/8 — Sex: 1 — Race: 0 — Ethnicity: 1

COV026A4
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

COV028A2
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

COV026A7
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

COV028B2
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/6 — Sex: 1 — Race: NA — Ethnicity: 3

COV022B1
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

— Age: 1/4 — Sex: 0 — Race: 0 — Ethnicity: 2

COV026A5
Interactive view

Sims Farber — Release: 1

Download: .h5ad md5 

Age: 1/7 — Sex: 1 — Race: NA — Ethnicity: 3

COVID-19 Autoimmunity PBMCs
Interactive view

Vento-Tormo group — Institute: SANGER — Release: 2

Download: .h5ad md5  — .csv

Nasal Epithelia
Interactive view

Shalek group & Ordovas-Montanes Lab Preprint — Institute: Broad BCH UMMC — Release: 2

Download: .h5ad md5 

Age: 0/1/1.8/3.0/4.0/5.0/6.0/8.0 — Sex: 0/1 — Race: 0/1 — Ethnicity: 1

00803_MGH_Broad00803_MGH_Broad
Interactive view

Villani group — Institute: MGH and Broad — Release: 1

Download: .h5ad md5 

Age: 4/5/6/7/8 — Sex: 0/1 — Race: 0/1/3 — Ethnicity: 1/2

Bronchoalveolar lavage fluid
Interactive view

Vandamme — Institute: VIB-UGent — Release: 1

Download: .h5ad md5 

Age: 1.8/3/4/5/6/7 — Sex: 0/1

Peripheral Blood Mononuclear Cells (PBMCs)
Interactive view

Blish Lab — Release: 1

Download: .h5ad md5  — .rds md5 

Sex: 0/1 — Source: Nature

COVID-19 PBMC Ncl-Cambridge-UCL
Interactive view

Haniffa Lab — Release: 1

Blood PBMCs from COVID-19 patients over time

Tsang Lab — Institute: NIH NIAID — Release: 1

Sex: 0/1 — Source: DOI

Adaptive Cells
Interactive view

Download h5ad/loom/rds — raw

Innate Cells
Interactive view

Download h5ad/loom/rds — raw

PBMCs and granulocytes

Blish Lab — Release: 1

Download: .rds md5 

Sex: 0/1 — Source: DOI

COVID-19 across age in ALI organoids
Interactive view

Download: Raw Counts De-souped Raw Counts